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        Download the raw data used to create the plots in this report below:

        Note that additional data was saved in multiqc_data when this report was generated.


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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        To help with this, you can download publication details of the tools mentioned in this report:

        About MultiQC

        This report was generated using MultiQC, version 1.15.dev0

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2023-03-21, 12:39 CET based on data in: /media/djn/6TB/SRA/bam/GEO_GCF


        General Statistics

        Showing 220/220 rows.
        Sample Name% Aligned
        SRR7819727
        97.4%
        SRR7819728
        98.0%
        SRR7819729
        97.5%
        SRR7819730
        98.0%
        SRR7819731
        98.0%
        SRR7819732
        97.2%
        SRR7819733
        97.3%
        SRR7819734
        97.4%
        SRR7819735
        98.0%
        SRR7819736
        98.1%
        SRR7819737
        97.4%
        SRR7819738
        97.3%
        SRR7819739
        97.8%
        SRR7819740
        97.2%
        SRR7819741
        97.5%
        SRR7819742
        97.2%
        SRR7819743
        97.9%
        SRR7819744
        98.0%
        SRR7819745
        97.8%
        SRR7819746
        97.5%
        SRR7819747
        97.4%
        SRR7819748
        97.5%
        SRR7819749
        97.4%
        SRR7819750
        97.6%
        SRR7819751
        97.3%
        SRR7819752
        97.8%
        SRR7819753
        98.0%
        SRR7819754
        96.7%
        SRR7819755
        98.0%
        SRR7819756
        97.7%
        SRR7819757
        97.8%
        SRR7819758
        97.9%
        SRR7819759
        97.5%
        SRR7819760
        97.8%
        SRR7819761
        98.1%
        SRR7819762
        98.0%
        SRR7819763
        98.1%
        SRR7819764
        97.5%
        SRR7819765
        97.6%
        SRR7819766
        97.8%
        SRR7819767
        96.9%
        SRR7819768
        97.9%
        SRR7819769
        97.7%
        SRR7819770
        97.4%
        SRR7819771
        97.5%
        SRR7819772
        97.8%
        SRR7819773
        97.6%
        SRR7819774
        97.8%
        SRR7819775
        97.5%
        SRR7819776
        97.7%
        SRR7819777
        96.9%
        SRR7819778
        97.8%
        SRR7819779
        97.6%
        SRR7819780
        97.7%
        SRR7819781
        97.8%
        SRR7819782
        98.4%
        SRR7819783
        97.0%
        SRR7819784
        97.5%
        SRR7819785
        98.0%
        SRR7819786
        97.5%
        SRR7819787
        97.4%
        SRR7819788
        97.2%
        SRR7819789
        97.6%
        SRR7819790
        98.1%
        SRR7819791
        98.0%
        SRR7819792
        97.4%
        SRR7819793
        98.4%
        SRR7819794
        98.1%
        SRR7819795
        97.7%
        SRR7819796
        97.9%
        SRR7819797
        97.8%
        SRR7819798
        97.4%
        SRR7819799
        97.7%
        SRR7819800
        97.4%
        SRR7819801
        97.7%
        SRR7819802
        97.6%
        SRR7819803
        97.7%
        SRR7819804
        97.8%
        SRR7819805
        97.4%
        SRR7819806
        98.0%
        SRR7819807
        97.8%
        SRR7819808
        96.2%
        SRR7819809
        97.7%
        SRR7819810
        98.0%
        SRR7819811
        97.7%
        SRR7819812
        97.7%
        SRR7819813
        97.6%
        SRR7819814
        97.1%
        SRR7819815
        97.5%
        SRR7819816
        97.4%
        SRR7819817
        97.2%
        SRR7819818
        97.7%
        SRR7819819
        95.9%
        SRR7819820
        97.6%
        SRR7819821
        97.2%
        SRR7819822
        97.4%
        SRR7819823
        97.3%
        SRR7819824
        97.5%
        SRR7819825
        97.4%
        SRR7819826
        97.6%
        SRR7819827
        97.5%
        SRR7819828
        96.3%
        SRR7819829
        97.2%
        SRR7819830
        97.2%
        SRR7819831
        97.0%
        SRR7819832
        97.4%
        SRR7819833
        97.5%
        SRR7819834
        97.7%
        SRR7819835
        97.4%
        SRR7819836
        97.6%
        SRR7819837
        96.8%
        SRR7819838
        98.0%
        SRR7819839
        97.2%
        SRR7819840
        96.5%
        SRR7819841
        98.0%
        SRR7819842
        97.8%
        SRR7819843
        97.4%
        SRR7819844
        97.6%
        SRR7819845
        97.3%
        SRR7819846
        97.1%
        SRR7819847
        96.6%
        SRR7819848
        97.1%
        SRR7819849
        97.7%
        SRR7819852
        97.6%
        SRR7819853
        95.1%
        SRR7819854
        97.3%
        SRR7819855
        97.6%
        SRR7819856
        97.7%
        SRR7819857
        97.3%
        SRR7819858
        97.8%
        SRR7819859
        97.4%
        SRR7819860
        97.9%
        SRR7819861
        97.7%
        SRR7819862
        96.1%
        SRR7819863
        97.5%
        SRR7819864
        97.6%
        SRR7819865
        97.6%
        SRR7819866
        97.1%
        SRR7819867
        97.5%
        SRR7819868
        97.6%
        SRR7819869
        98.0%
        SRR7819870
        97.5%
        SRR7819871
        97.7%
        SRR7819872
        97.8%
        SRR7819873
        97.9%
        SRR7819874
        97.2%
        SRR7819875
        97.3%
        SRR7819876
        95.3%
        SRR7819877
        96.8%
        SRR7819878
        98.0%
        SRR7819879
        97.3%
        SRR7819880
        97.6%
        SRR7819881
        97.6%
        SRR7819882
        96.9%
        SRR7819883
        97.9%
        SRR7819884
        96.3%
        SRR7819885
        97.3%
        SRR7819886
        97.5%
        SRR7819887
        97.0%
        SRR7819888
        96.9%
        SRR7819889
        97.7%
        SRR7819890
        97.2%
        SRR7819891
        97.8%
        SRR7819892
        96.3%
        SRR7819893
        97.9%
        SRR7819894
        97.4%
        SRR7819895
        97.8%
        SRR7819896
        95.8%
        SRR7819897
        97.4%
        SRR7819898
        96.2%
        SRR7819899
        96.7%
        SRR7819900
        97.6%
        SRR7819901
        96.8%
        SRR7819902
        97.3%
        SRR7819903
        97.1%
        SRR7819904
        98.0%
        SRR7819905
        96.9%
        SRR7819906
        97.7%
        SRR7819907
        97.2%
        SRR7819908
        96.8%
        SRR7819909
        97.0%
        SRR7819910
        93.8%
        SRR7819911
        97.7%
        SRR7819912
        97.6%
        SRR7819913
        96.2%
        SRR7819914
        95.6%
        SRR7819915
        97.9%
        SRR7819916
        96.5%
        SRR7819917
        97.5%
        SRR7819918
        96.6%
        SRR7819919
        96.6%
        SRR7819920
        96.7%
        SRR7819921
        96.0%
        SRR7819922
        95.9%
        SRR7819923
        97.2%
        SRR7819924
        96.5%
        SRR7819925
        97.0%
        SRR7819926
        95.3%
        SRR7819927
        95.6%
        SRR7819928
        97.2%
        SRR7819929
        96.5%
        SRR7819930
        96.5%
        SRR7819931
        96.9%
        SRR7819932
        96.2%
        SRR7819933
        96.3%
        SRR7819934
        97.3%
        SRR7819935
        95.7%
        SRR7819936
        96.2%
        SRR7819937
        96.9%
        SRR7819938
        96.2%
        SRR7819939
        94.3%
        SRR7819940
        96.8%
        SRR7819941
        97.0%
        SRR7819942
        97.2%
        SRR7819943
        95.8%
        SRR7819944
        72.2%
        SRR7819945
        96.8%
        SRR7819946
        97.5%
        SRR7819947
        97.5%
        SRR7819948
        96.6%

        HISAT2

        HISAT2 is a fast and sensitive alignment program for mapping NGS reads (both DNA and RNA) against a reference genome or population of reference genomes.DOI: 10.1038/nmeth.3317; 10.1038/s41587-019-0201-4.

        Please note that single mate alignment counts are halved to tally with pair counts properly.

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